The additional stuff that you enter into the page Admin/Site/Template.aspx will be appended to the files under App_Data/Themes_Templates/{theme}. Templates give you the shortcut to change the default settings without touching the theme files. The general rule is that use Admin/Site/Template.aspx if you have small changes on top of the existing theme. If you have major changes, then it's a good idea to create a complete new theme.
DotShoppingCart Staff
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