Yes, it should work just fine. You don't need to touch DSC.config since it will be updated when you change site configuration in store admin. You can also check instDSC.exe source code to understand what it's doing. It's not complicated.
Another way is to run instDSC.exe on your local machine. And then back up database and restore it to the production server. Upload the files and update web.config.
DotShoppingCart Staff
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